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Protein Structure Alignment with GANGSTA+



aysam.guerler(at)gmail.com
RELEASE V3.04 - THE NEWEST VERSION OF GANGSTA+ IS AVAILABLE FOR DOWNLOAD IN THE HELP CENTER
 






















 
  • Original GANGSTA+ Source Code written in C++

  • All-against-all protein structure alignment results in text-file format

       
  • Guerler, Wang and Knapp, Symmetric Structures in the Universe of Protein Folds
    J. Chem. Inf. Model., 2009, 49 (9), 2147-2151, 2009

    		   






  • Guerler and Knapp, GIS: A comprehensive source for protein structure similarities Nucleic Acids Research, 2010



  • Schmidt-Goenner, Guerler, Kolbeck and Knapp, Circular permuted Proteins in the Universe of Protein Folds
    Proteins, 2009



  • Guerler and Knapp, Novel Protein Folds and their Nonsequential Structural Analogs
    Protein Science 17, 1372-82, 2008

     
  • Guerler and Knapp, Evaluation of Sequence Alignments of Distantly related Sequence Pairs with respect to Structural Similarity
    Genome Informatics 18, 183-191, 2007



  • Guerler and Knapp, Strategies of Non-Sequential Structure Alignments
    Genome Informatics 22, 21-29, 2009



  • Guerler, Detection of non-sequential structural analogs with GANGSTA+
    International Conference on Bioinformatics and Systems Biology, Boston, USA, 2009








Reference : Guerler and Knapp, Novel Folds and their Nonsequential Structural Analogs, Protein Science 17:8, 1374 - 1382, 2008



© 2009. Knapp Laboratories. Free University of Berlin. Institute of Chemistry and Biochemistry. Fabeckstrasse 36A. D-14195 Germany