| ngcomp::ApplyFineMatrix | |
| Atom | An atom is defined by this class |
| ngcomp::BDDCMatrix< SCAL, TV > | |
| ngcomp::BDDCPreconditioner< SCAL, TV > | |
| Charge | An atom point charge is defined |
| netgen::CheapPointFunction | |
| netgen::CheapPointFunction1 | |
| netgen::ClearVisitedIt | |
| ngsolve::ConstrainedMatrix | |
| ngsolve::ConstrainedPrecondMatrix | |
| ngfem::ControlDestruction | |
| ngfem::ConvectionIntegrator< D > | |
| netgen::CSGeometryRegister | |
| netgen::CSGeometryVisRegister | |
| netgen::CSGInit | |
| netgen::DelaunayTet | |
| netgen::DemoScanner | |
| netgen::DemoView | |
| netgen::demoview_kwstruct | |
| ngfem::DGBoundaryFacet_ConvectionIntegrator< D > | |
| ngfem::DGBoundaryFacet_LaplaceIntegrator< D, dgtype > | |
| ngfem::DGFacet_ConvectionDirichletBoundaryIntegrator< D > | |
| ngfem::DGFacet_DirichletBoundaryIntegrator< D, dgtype > | |
| ngfem::DGFacet_NeumannBoundaryIntegrator< D > | |
| ngfem::DGInnerFacet_ConvectionIntegrator< D > | |
| ngfem::DGInnerFacet_LaplaceIntegrator< D, dgtype > | |
| ngcomp::DiffOpIdHDG< D > | Identity |
| ngcomp::DirectPreconditioner | |
| netgen::EDGE | |
| netgen::FACE | |
| Facet | A face (trianlge) is defined |
| ngfem::FE_Pyramid3RefEdgeBubble | |
| ngfem::FE_Pyramid3RefFaceBubble | |
| ngfem::FE_Tet3EdgeBubble | |
| ngfem::FE_TFaceTest< ORDER, ZORDER > | |
| ngfem::FE_Trig3EdgeBubble | |
| ngfem::FE_TVolTest3< ZORDER > | |
| ngfem::FE_TVolTest3NoGrad< ZORDER > | |
| g | |
| gp | |
| gzstreambase | |
| gzstreambuf | |
| ngfem::HDG_ConvectionIntegrator< D > | |
| ngfem::HDG_LaplaceIntegrator< D > | |
| ngfem::HDG_LaplaceIntegrator2< D > | |
| ngfem::HDG_LaplaceIntegrator3< D > | |
| ngfem::HDG_LaplaceIntegrator4< D > | |
| ngcomp::HDG_MassIntegrator< D > | |
| ngfem::HDGBR_LaplaceIntegrator< D > | |
| ngfem::HDGBRF_LaplaceIntegrator< D > | |
| igzstream | |
| netgen::ImprovementRule | |
| ngsolve::numproc_cpp::Init | |
| ngcomp::hdivfes_cpp::Init | |
| ngcomp::l2hofespace_cpp::Init | |
| ngcomp::hcurlhdives_cpp::Init | |
| ngfem::bdbequations_cpp::Init | |
| ngfem::hdiv_equations_cpp::Init | |
| ngfem::maxwellint::Init | |
| ngfem::recursive_pol_cpp::Init | |
| ngfem::pml_cpp::Init | |
| ngfem::IntegrationRules | |
| netgen::InterpolationPoint< S > | |
| netgen::InterpolationSpline< S > | |
| netgen::InterpolationSpline< S >::intpts | |
| netgen::inttn6 | |
| netgen::JacobiRecPol | |
| ngsolve::kwstruct | |
| netgen::LoadType | |
| LSMS | A small LSMS wrapper which is directly using some methods or calling them from LSMS lib files |
| netgen::MarkedIdentification | |
| netgen::MarkedPrism | |
| netgen::MarkedQuad | |
| netgen::MarkedTet | |
| netgen::MarkedTri | |
| netgen::MeshNB | |
| mFace | |
| mMesh | |
| Model | A model is a surface for the protein or titratable group depending on the approach used. Also building up the whole volume models merging with the boundary is implemented here using NETGEN |
| mUsedTypes | |
| mvector | |
| mVertex | |
| nb | |
| netgen::Neighbour | |
| ngcomp::Ng_ElementTransformation< DIMS, DIMR > | |
| Ng_Meshing_Parameters | Netgen Meshing Parameters class |
| nglib::Ng_Meshing_Parameters | Netgen Meshing Parameters class |
| Ng_SolutionData | |
| ngsolve::NumProcAnalyze | |
| ngsolve::NumProcApplyMat | |
| ngsolve::NumProcBVP | |
| ngsolve::NumProcCalcFlux | |
| ngsolve::NumProcClearGridFunctions | |
| ngsolve::NumProcConstrainedBVP | |
| ngsolve::NumProcDifference | |
| ngsolve::NumProcDrawCoefficient | |
| ngsolve::NumProcDrawFlux | |
| ngsolve::NumProcEvaluate | |
| ngsolve::NumProcGenerateOne | |
| ngsolve::NumProcHierarchicalErrorEstimator | |
| NumProcHyperbolic | |
| ngsolve::NumProcIntegrate | |
| ngsolve::NumProcLoadSolution | |
| ngsolve::NumProcLoadSolution2 | |
| ngsolve::NumProcLoadZipSolution | |
| ngsolve::NumProcMarkElements | |
| ngsolve::NumProcPrimalDualErrorEstimator | |
| ngsolve::NumProcQuit | |
| ngsolve::NumProcRTZZErrorEstimator | |
| ngsolve::NumProcSaveSolution | |
| ngsolve::NumProcSaveSolution2 | |
| ngsolve::NumProcSetValues | |
| ngsolve::NumProcSetVisual | |
| ngsolve::NumProcShapeTester | |
| ngsolve::NumProcTclMenu | |
| ngsolve::NumProcTclTable | |
| ngsolve::NumProcVisualization | |
| ngsolve::NumProcWarn | |
| ngsolve::NumProcWriteFile | |
| ngsolve::NumProcZZErrorEstimator | |
| ogzstream | |
| netgen::Opti2dLocalData | |
| netgen::Opti2EdgeMinFunction | |
| netgen::Opti2SurfaceMinFunction | |
| netgen::Opti2SurfaceMinFunctionJacobian | |
| netgen::Opti3FreeMinFunction | |
| p | |
| PDE | This class holds the information to generate PDE files which can are used to compute potential energies |
| ngsolve::PDEScanner | |
| ngfem::PML_CurlCurlEdgeIntegrator< D > | |
| ngfem::PML_DivDivHDivIntegrator< D > | |
| ngfem::PML_ElasticityIntegrator< D, FEL > | |
| ngfem::PML_LaplaceIntegrator< D, FEL > | |
| ngfem::PML_MassEdgeIntegrator< D > | |
| ngfem::PML_MassHDivIntegrator< D > | |
| ngfem::PML_MassIntegrator< D, FEL > | |
| ngfem::PML_RobinHDivIntegrator< D > | |
| netgen::POINT3D | |
| netgen::PointFunction | |
| PQR | PQR class model to handle proteins (atoms and titratable groups) |
| prot | |
| netgen::RecPol | |
| Residue | This class is a datastructure to represent residues in proteins |
| vcg::tri::SmallComponent< _MeshType > | |
| netgen::SphereList | |
| netgen::SplineGeoInit | |
| netgen::SplineGeometryRegister | |
| netgen::SplineGeometryVisRegister | |
| ST | This class is a datastructure to represent ST files. These files hold all information about titratable groups in the protein |
| STLFacet | |
| netgen::STLGeometryRegister | |
| netgen::STLGeometryVisRegister | |
| netgen::STLInit | |
| netgen::SURFELEMENT | |
| tCycle | |
| Triangle | |
| netgen::trionedge | |
| netgen::VOLELEMENT | |
| Voxel | |
| netgen::WritePrimitivesIt | |
