File List

Here is a list of all files with brief descriptions:

adfront2.cpp
adfront3.cpp
adtree.cpp
adtree.h [code]
algprim.cpp
arnoldi.cpp
array.cpp
Atom.h [code]	An atom is descriped parsed from PQR file
bandmatrix.cpp
basegeom.cpp
basematrix.cpp
basevector.cpp
bcfunctions.cpp
bdbequations.cpp
bddc.cpp
bfgs.cpp
bilinearform.cpp
bisect.cpp
netgen-5.1/libsrc/general/bitarray.cpp
ngsolve-5.1/ngstd/bitarray.cpp
blockalloc.cpp
blockjacobi.cpp
boundarylayer.cpp
brick.cpp
bspline2d.cpp
bvp.cpp
calcinverse.cpp
cg.cpp
Charge.h [code]	Defining a point charge in the implicit solvent model
chebyshev.cpp
cholesky.cpp
clapack.h [code]
clusters.cpp
coefficient.cpp
commutingAMG.cpp
config.h [code]
csgeom.cpp
csgparser.cpp
csgpkg.cpp
curve2d.cpp
curvedelems.cpp
Defs.h [code]	Some definitions used in the whole application
delaunay.cpp
delaunay2d.cpp
demoview.cpp
densemat.cpp
DGIntegrators.cpp
diffop.cpp
dynamicmem.cpp
edgeflw.cpp
eigen.cpp
eigensystem.cpp
elementbyelement.cpp
elementtopology.cpp
elementtransformation.cpp
evalfunc.cpp
evplapack.cpp
exception.cpp
explicitcurve2d.cpp
extrusion.cpp
facetfespace.cpp
fastmat.cpp
fespace.cpp
finiteelement.cpp
netgen-5.1/libsrc/general/flags.cpp
ngsolve-5.1/ngstd/flags.cpp
gencyl.cpp
generalizedEVP.cpp
generic_recpol.cpp
genmesh.cpp
genmesh2d.cpp
geom2d.cpp
geom2dmesh.cpp
geom2dpkg.cpp
geom3d.cpp
geometry2d.cpp
geomfuncs.cpp
geomsearch.cpp
geomtest3d.cpp
global.cpp
grid.cpp
grid.h [code]
gridfunction.cpp
gridTypes.h [code]
gzstream.cpp
gzstream.h [code]
h1hofe.cpp
h1hofespace.cpp
h1lofe.cpp
hashtabl.cpp
hcurlfe.cpp
hcurlhdivfes.cpp
hcurlhofe.cpp
hcurlhofespace.cpp
hdiv_equations.cpp
hdivfe.cpp
hdivfes.cpp
hdivhofe.cpp
hdivhofespace.cpp
help.h [code]
hierarchicalee.cpp
hprefinement.cpp
hybridDG.cpp
hyperbolic.cpp
hypre_precond.cpp
identify.cpp
importsolution.cpp
improve2.cpp
improve2gen.cpp
improve3.cpp
integrator.cpp
intrule.cpp
jacobi.cpp
l2hofe.cpp
l2hofespace.cpp
LapackGEP.cpp
linearform.cpp
linopt.cpp
linsearch.cpp
localh.cpp
localheap.cpp
LSMS.h [code]	Wraps methods used by LSMS to build the initial fine grained molecular surface of a protein
manifold.cpp
maxwellintegrator.cpp
meshaccess.cpp
meshclass.cpp
meshdoc.cpp
meshfunc.cpp
meshfunc2d.cpp
meshing2.cpp
meshing3.cpp
meshstlsurface.cpp
meshsurf.cpp
meshtool.cpp
meshtype.cpp
mfes.cpp	Main file to start mFES computations
mgpre.cpp
Model.h [code]	Different models for meshing are set up within this file
molTypes.h [code]
mpi_interface.cpp
msghandler.cpp
mumpsinverse.cpp
mvdraw.cpp
mystdlib.h [code]
mystring.cpp
netrule2.cpp
netrule3.cpp
ng_stl.cpp
ng_vol.cpp
ngappinit.cpp
ngexception.cpp
nginterface.cpp
nginterface.h [code]
nginterface_v2.cpp
nglib.cpp
nglib.h [code]	Library interface to the netgen meshing kernel
ngpkg.cpp
ngs.cpp
ngsobject.cpp
ngsolve.cpp
nptests.cpp
numproc.cpp
numprocee.cpp
occconstruction.cpp
occgenmesh.cpp
occgeom.cpp
occmeshsurf.cpp
occpkg.cpp
onetcl.cpp
optmem.cpp
optmem.h [code]
order.cpp
parallel_matrices.cpp
parallelfunc.cpp
parallelmesh.cpp
paralleltop.cpp
parallelvvector.cpp
pardisoinverse.cpp
parser2.cpp
parser3.cpp
parthreads.cpp
pdbLoader.h [code]
pde.cpp
PDE.h [code]	Input file generation for NGSolve
pdeparser.cpp
pml.cpp
polyhedra.cpp
polynomial.cpp
postproc.cpp
PQR.h [code]	PQR model, energy and pKA computation management. Helper methods
preconditioner.cpp
prism2rls.cpp
netgen-5.1/libsrc/general/profiler.cpp
ngsolve-5.1/ngstd/profiler.cpp
prolongation.cpp
pyramid2rls.cpp
pyramidrls.cpp
quadrls.cpp
read_fnf_mesh.cpp
README.md
readtetmesh.cpp
readuser.cpp
recursive_pol.cpp
recursive_pol_trig.cpp
refine.cpp
Residue.h [code]	Holds the general description of a residue in proteins
revolution.cpp
ruler2.cpp
ruler3.cpp
scalarfe.cpp
sceneBuilder.cpp
sceneBuilder.h [code]
secondorder.cpp
seti.cpp
shapetester.cpp
singularref.cpp
smoother.cpp
smoothing2.5.cpp
smoothing2.cpp
smoothing3.cpp
solid.cpp
sort.cpp
sparsecholesky.cpp
sparsematrix.cpp
spbita2d.cpp
special_matrix.cpp
specialelement.cpp
specials.cpp
specpoin.cpp
spline.cpp
spline3d.cpp
splinegeometry.cpp
ST.h [code]	ST file parser and titratable group builder
stlgeom.cpp
stlgeomchart.cpp
stlgeommesh.cpp
stlline.cpp
stlpkg.cpp
stltool.cpp
stltopology.cpp
stringops.cpp
superluinverse.cpp
surface.cpp
symbolta.cpp
symboltable.cpp
netgen-5.1/libsrc/general/table.cpp
ngsolve-5.1/ngstd/table.cpp
tCycle.h [code]
templates.cpp
test.cpp
tetrarls.cpp
togl_1_7.h [code]
topology.cpp
transform3d.cpp
triapprox.cpp
triarls.cpp
utilities.h [code]
validate.cpp
VCG.h [code]
vecmat.cpp
vectorfacetfe.cpp
vectorfacetfespace.cpp
voxel.cpp
Voxel.h [code]
vscsg.cpp
vsfieldlines.cpp
vsgeom2d.cpp
vsmesh.cpp
vsocc.cpp
vssolution.cpp
vsstl.cpp
writeabaqus.cpp
writediffpack.cpp
writedolfin.cpp
writeelmer.cpp
writefeap.cpp
writefluent.cpp
writegmsh.cpp
writegmsh2.cpp	Export Netgen Mesh in the GMSH v2.xx File format
writejcm.cpp
writeOpenFOAM15x.cpp	Export Netgen Mesh in the OpenFOAM 1.5+ File format
writepermas.cpp
writetecplot.cpp
writetet.cpp
writetochnog.cpp
writeuser.cpp
wuchemnitz.cpp
zrefine.cpp